Pathway Dataset Visualization Dashboard

Generated from 48,779 pathway images

48,779
Total Images
8,000
With Gene Data
27,641
Unique Genes
18.7
Avg Genes/Image
2,343
Unique Pathways
81
High-Overlap Pairs
Key Insight: The UMAP plot below clusters images by gene similarity. Images close together share many genes. Colors represent canonical pathway labels— if same-colored points are spread out, it means that pathway label covers diverse biological contexts.

Gene Overlap Clustering (2D)

Gene Overlap Clustering (3D) - Interactive

Click and drag to rotate. Scroll to zoom. Double-click to reset view.

Pathway Distribution

Overlap Distribution

Node & Edge Counts

High-Similarity Pairs (Jaccard ≥ 80%)

Found 81 pairs with ≥80% gene overlap. Top 100 shown:

Image 1Image 2SimilarityShared Genes
PMC8773419__F1.jpg PMC9200284__F1.jpg 100.0% DNMT1, DNMT3A, DNMT3B, TDG, TET
PMC4532730__F8.jpg PMC4532730__F9.jpg 100.0% CAT, FASR, NOS, NOX1, POD
PMC5662125__F1.jpg PMC9350527__F1.jpg 100.0% CYP27A1, CYP7A1, CYP7B1, CYP8B1
PMC4832581__F2.jpg PMC7589120__F1.jpg 100.0% ATP13A2, C19ORF12, COASY, CP, DCAF17, FA2H, FTL, PANK2, PLA2G6, WDR45
PMC8087698__F1.jpg PMC5552450__F6.jpg 100.0% PHGDH, PSAT1, PSPH, SHMT
PMC6826985__F6.jpg PMC6423593__F6.jpg 97.6% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CD38, CYP-D... (+30 more)
PMC3610926__F2.jpg PMC6826985__F6.jpg 95.1% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CD38, CYP-D... (+29 more)
PMC6826985__F6.jpg PMC5837202__F3.jpg 95.1% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CD38, CYP-D... (+29 more)
PMC8818883__F6.jpg PMC4647707__F3.jpg 94.4% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+57 more)
PMC7343132__F3.jpg PMC4647707__F3.jpg 94.3% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+56 more)
PMC10242764__F7.jpg PMC8284093__F10.jpg 93.9% 14-3-3-SIGMA, AIFM2, APAF-1, ATM, ATR, B99, BAI-1, BAX, BCL-XL, BCL2... (+52 more)
PMC5515284__F7.jpg PMC5686903__F2.jpg 93.3% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+46 more)
PMC3610926__F2.jpg PMC6423593__F6.jpg 92.7% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CD38, CYP-D... (+28 more)
PMC5837202__F3.jpg PMC6423593__F6.jpg 92.7% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CD38, CYP-D... (+28 more)
PMC8082393__F8.jpg PMC9453879__F7.jpg 92.0% ACBP, ACO, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7... (+36 more)
PMC8082393__F8.jpg PMC4898689__F8.jpg 92.0% ACBP, ACO, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7... (+36 more)
PMC3493339__F1.jpg PMC3149098__F6.jpg 91.8% ABL, AR, BAD, BTC, CAMK, CBL, CRK, EGF, ELK, EPR... (+35 more)
PMC7343132__F3.jpg PMC8818883__F6.jpg 91.5% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+55 more)
PMC7528617__F6.jpg PMC7181582__F6.jpg 90.5% 4E-BP1, AKT, ALDOA, ANGPT, ANP, BCL-2, CAMK, CD18, CUL2, EDN1... (+47 more)
PMC3610926__F2.jpg PMC5837202__F3.jpg 90.2% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CD38, CYP-D... (+27 more)
PMC8082393__F8.jpg PMC5243181__F1.jpg 90.2% ACBP, ACO, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7... (+36 more)
PMC9453879__F7.jpg PMC5243181__F1.jpg 90.2% ACBP, ACO, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7... (+36 more)
PMC4898689__F8.jpg PMC5243181__F1.jpg 90.2% ACBP, ACO, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7... (+36 more)
PMC4312599__F5.jpg PMC4788885__F5.jpg 89.9% APC, AXIN, BETA-CATENIN, BETA-TRCP, C-JUN, C-MYC, CAMKII, CAN, CBP, CER-1... (+52 more)
PMC5559174__F2.jpg PMC7816800__F7.jpg 89.1% 4EBP, AKT, AMPK, ATG13, EIF3, EIF4A, EIF4B, EIF4E, EIF4G, ERK 1/2... (+31 more)
PMC8588809__F2.jpg PMC7816800__F7.jpg 88.9% 4EBP, AKT, AMPK, ATG13, DGK, EIF3, EIF4A, EIF4B, EIF4E, EIF4G... (+30 more)
PMC5697091__F8.jpg PMC8818883__F6.jpg 88.9% AKT, AP-1, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD... (+54 more)
PMC9453879__F7.jpg PMC4898689__F8.jpg 88.2% ACBP, ACO, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7... (+35 more)
PMC4898689__F8.jpg PMC6458848__F3.jpg 88.2% ACBP, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7, CAP... (+35 more)
PMC5697091__F8.jpg PMC4469326__F2.jpg 87.1% AKT, AP-1, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD... (+51 more)
PMC5559174__F2.jpg PMC8588809__F2.jpg 87.0% 4EBP, AKT, AMPK, ATG13, EIF3, EIF4A, EIF4B, EIF4E, EIF4G, ERK 1/2... (+30 more)
PMC6458848__F3.jpg PMC5243181__F1.jpg 86.5% ACBP, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7, CAP... (+35 more)
PMC10242764__F7.jpg PMC5686903__F2.jpg 86.4% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+47 more)
PMC8284093__F10.jpg PMC5686903__F2.jpg 86.4% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+47 more)
PMC7569177__F9.jpg PMC7062075__F4.jpg 86.2% ABL, ARF, ATM/ATR, BUB1, BUBR1, C-MYC, CDC14, CDC20, CDC25A, CDC25B,C... (+46 more)
PMC9384889__F8.jpg PMC8100412__F9.jpg 85.9% A20, ACT1, ANAPC5, C/EBPBETA, CASP, CCL20, COX2, CXCL1, CXCL10, CXCL2... (+51 more)
PMC6878604__F1.jpg PMC6887951__F4.jpg 85.7% AKT, ERK, FGF, FGFR, FGFRL1, FRS2, GAB1, GRB2, MEK, MKP1... (+8 more)
PMC6955744__F5.jpg PMC3618314__F7.jpg 85.7% ACTIVINS / INHIBINS, BCL-2, BMP 2/4/7, C-JUN, C-RAF, CBP, ERK 1/2, FOXH1, GRB2, GSC... (+38 more)
PMC5467707__F4.jpg PMC6664293__F2.jpg 85.7% ABAD, ADAM10, APAF1, APH-1, APOE, APP, APP-BP1, ATF6, BACE, BAD... (+38 more)
PMC10380440__F2.jpg PMC10288531__F2A.jpg 85.0% ACTIN, CASQ2, CYTO, DHPR, HRC, JCN, MYOSIN, NCX, NHE, RYR2... (+7 more)
PMC5850959__F6.jpg PMC4936987__F4.jpg 85.0% ACO2, CS, DLD, DLST, FH, IDH2, IDH3A, IDH3B, IDH3G, MDH2... (+7 more)
PMC7249037__F7.jpg PMC9369058__F6.jpg 84.7% AKT, APC, AXIN, BAK, BAX, BETA-CATENIN, BRCA1, BRCA2, C-MYC, CCND1... (+40 more)
PMC4469326__F2.jpg PMC8818883__F6.jpg 84.7% AKT, AP-1, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD... (+51 more)
PMC8082393__F8.jpg PMC6458848__F3.jpg 84.6% ACBP, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7, CAP... (+34 more)
PMC7917105__F4.jpg PMC8906750__F1.jpg 84.6% 4CL, C3'H, C4H, CAD, CCOAOMT, CCR, COMT, CSE, F5H, HCT... (+1 more)
PMC9453879__F7.jpg PMC6458848__F3.jpg 84.6% ACBP, ACS, ADIPO, AP2, APO-AI, APO-AII, APO-AV, APO-CIII, AQP7, CAP... (+34 more)
PMC5686903__F2.jpg PMC6068465__F5.jpg 84.4% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+44 more)
PMC2586935__F4.jpg PMC6548759__F3.jpg 84.3% ACTIVIN, ACTIVINRI, ACTIVINRII, BMP, BMPRI, BMPRII, C-MYC, CHORDIN, CUL1, DAN... (+33 more)
PMC5501956__F3.jpg PMC5547956__F7.jpg 83.9% ASK1, ASK2, ATF-2, BDNF, C-JUN, C-MYC, CACN, CD14, CREB, DAXX... (+68 more)
PMC4450051__F4.jpg PMC8818883__F6.jpg 83.8% AKT, AP-1, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD... (+52 more)
PMC5697091__F8.jpg PMC4647707__F3.jpg 83.8% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+52 more)
PMC7528617__F6.jpg PMC5133779__F4.jpg 83.6% 4E-BP1, AKT, ALDOA, ANGPT, ANP, BCL-2, CAMK, CD18, CUL2, EDN1... (+46 more)
PMC7343132__F3.jpg PMC5697091__F8.jpg 83.6% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+51 more)
PMC2938197__F1.jpg PMC2747168__F1.jpg 83.3% TRM5, TYW1, TYW2, TYW3, TYW4
PMC6828590__F13.jpg PMC4646468__F4.jpg 83.3% AKT/PKB, BAD, CASP9, CDC42, COX2, CPLA2, ENOS, ERK, FAK, HSP27... (+15 more)
PMC7642714__F8.jpg PMC8851844__F8.jpg 83.3% ASC, BCL-3, BCL10, CALM, CARD9, CASP1, CASP8, CBLB, CLEC2, CYLD... (+45 more)
PMC5515284__F7.jpg PMC10242764__F7.jpg 83.3% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+45 more)
PMC5515284__F7.jpg PMC8284093__F10.jpg 83.3% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+45 more)
PMC7090118__F3.jpg PMC4491684__F1.jpg 83.3% GLI, HH, PTCH1, SMO, SUFU
PMC5700962__F9.jpg PMC9369058__F6.jpg 83.1% AKT, APC, AXIN, BETA-CATENIN, BRCA1, BRCA2, C-MYC, CCND1, CDK4/6, DELTA... (+39 more)
PMC2586935__F4.jpg PMC6097464__F7.jpg 83.0% ACTIVIN, ACTIVINRI, ACTIVINRII, BMP, BMPRI, BMPRII, C-MYC, CHORDIN, CUL1, DAN... (+34 more)
PMC8436938__F13.jpg PMC7569177__F9.jpg 82.8% 14-3-3SIGMA, ARF, ATM/ATR, BUB1, BUBR1, C-MYC, CDC20, CDC25A, CDC25B,C, CDC45... (+43 more)
PMC8917441__F8.jpg PMC7242738__F3.jpg 82.7% AIP1, AKT, ASK1, C-FLIP, C-JUN, CASP10, CASP3, CASP7, CASP8, CCL2... (+33 more)
PMC9657932__F2.jpg PMC4202123__F1.jpg 82.4% AKT, EGF, EGFR, ERK1/2, GRB2, MEK1/2, PDK, PI3K, PTEN, RAF... (+4 more)
PMC7264424__F8.jpg PMC6423593__F6.jpg 82.2% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CYP-D, FAK2... (+27 more)
PMC2099624__F9.jpg PMC2652397__F1.jpg 81.8% CUL3, E2, GST, KEAP1, MAF, NQO1, NRF2, RBX1, UB
PMC8436938__F13.jpg PMC7062075__F4.jpg 81.8% ARF, ATM/ATR, BUB1, BUB3, BUBR1, C-MYC, CDC20, CDC25A, CDC25B,C, CDC45... (+44 more)
PMC4221550__F3.jpg PMC3315368__F4.jpg 81.6% BDNF, C-MYC, CACN, CNRASGEF, CPLA2, CREB, EGF, EGFR, ELK-1, ERK... (+30 more)
PMC4469326__F2.jpg PMC5394545__F5.jpg 81.4% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+47 more)
PMC5515284__F7.jpg PMC6068465__F5.jpg 81.2% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+42 more)
PMC6281268__F6.jpg PMC6083487__F4.jpg 81.2% ATM, ATR, C-RAF, CDC25A, CDK1, CDK2, CDK7, CYCLIN A, CYCLIN B, CYCLIN D1... (+16 more)
PMC8041881__F4.jpg PMC8100412__F9.jpg 81.2% A20, ACT1, ANAPC5, C/EBPBETA, CASP, CCL2, CCL20, COX2, CXCL1, CXCL10... (+46 more)
PMC4450051__F4.jpg PMC5697091__F8.jpg 81.1% AKT, AP-1, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD... (+50 more)
PMC7181582__F6.jpg PMC5133779__F4.jpg 80.9% 4E-BP1, AKT, ALDOA, ANGPT, ANP, BCL-2, CAMK, CD18, CUL2, EDN1... (+45 more)
PMC10242764__F7.jpg PMC6068465__F5.jpg 80.9% 14-3-3-SIGMA, APAF-1, ATM, ATR, B99, BAI-1, BAX, BID, CASP3, CASP8... (+45 more)
PMC5394545__F5.jpg PMC8818883__F6.jpg 80.8% AKT, CASP8, CD14, CD40, CD80, CD86, CTSK, ERK, FADD, I-TAC... (+49 more)
PMC7249037__F7.jpg PMC5700962__F9.jpg 80.7% AKT, APC, AXIN, BETA-CATENIN, BRCA1, BRCA2, C-MYC, CCND1, CDK4/6, DELTA... (+36 more)
PMC7264424__F8.jpg PMC6826985__F6.jpg 80.4% ADCY, ANT, CALM, CAMK, CAN, CAV1, CAV2, CAV3, CYP-D, FAK2... (+27 more)
PMC6491842__F4.jpg PMC6664293__F2.jpg 80.4% ABAD, ADAM10, APAF1, APH-1, APOE, APP, APP-BP1, ATF6, BACE, BAD... (+35 more)
PMC2721821__F6.jpg PMC3759014__F1.jpg 80.0% GLI, PTCH1, SHH, SMO
PMC6097464__F7.jpg PMC6548759__F3.jpg 80.0% ACTIVIN, ACTIVINRI, ACTIVINRII, BAMBI, BMP, BMPRI, BMPRII, C-MYC, CHORDIN, CUL1... (+34 more)